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SNEPv2

The first step of the prediction pipeline is to specify the protein sequence(s) for which predictions should be performed. You have four options to input sequences: retrieve sequences from the Swiss-Prot or RefSeq database, upload a file in Fasta format, or paste your own sequences. If you retrieve polymorphisms for the RefSeq database, a heterocygosity restriction is available. Click on Help for details. Click on the submit button on the bottom of this page to display all requested or pasted sequences.
Swiss-Prot UniProt website
Release 57.14
Input
 Blank separated list of Primary accession number(s) (e.g. Q15397), Swiss-Prot entry name(s) (e.g. K0020_HUMAN) or Gene name(s) (e.g. KIAA0020)
RefSeq RefSeq website
Release 39
Input
 Blank separated list of RefSeq accession(s) (e.g. NP_055693) or GeneId(s) (e.g. 9933)
  :     [%]
Heterozygosity restriction can be used to define a percentage-range to restrict the average heterozygosity of SNPs to search for. To use this option please select the corresponding checkbox and define a percentage range. The left selection defines the lower bound and the right selection defines the upper bound.
Notice:    Not all SNP entries contain heterozygosity annotation. To also access SNPs without heterozygosity annotation do not select the Heterozygosity restriction checkbox.
Fasta upload
Input
 File content has to be in polymorphic Fasta format (see documentation).
Paste sequence(s)
Input
 Possible formats are Fasta or raw sequences only. Separate entries by blank lines.
More than 99 sequences pasted at once will cause an error. We are working on that problem. Sorry for the inconvenience!
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